Good morning, I have the same problem that you have already discussed in the forum on this page.
https://www.joomshaper.com/forum/question/24545
I implemented the proposed resolution and solved that problem (double logo in macro template 3.0.0)
However, another problem arose for me: The color of the bottom and footer became white in the desktop view. While respecting the colors selected in the template style layout in the mobile view.
www.studiocatenazzi.com
You can help me?
Thank you