Judging by your screenshots, it looks like you have Helix 3 and Helix Ultimate installed on your site at the same time. They are not compatible on the same site and conflict. This is especially true for the mega menu. You need to uninstall Helix 3 and especially all its plugins.
This interface is Helix 3 mega-menu.
Helix Ultimate's mega menu looks like this
And keep in mind, the mega menu only works for the top menu level. This doesn't work for child menu items.
This screenshot looks like you are trying to set up a mega menu for a child menu item.